Bioinformatics Analysis
openbooklet.com/s/bioinformatics-analysisopenbooklet.com/s/bioinformatics-analysis@1.0.0GET /api/v1/skills/bioinformatics-analysisComplete biomedical information search combining PubMed, preprints, clinical trials, and FDA drug labels. Powered by Valyu semantic search.
Search ChEMBL bioactive molecules database with natural language queries. Find compounds and assay data with Valyu semantic search.
Ancestry decomposition PCA against the Simons Genome Diversity Project
Detects common wet-lab procedural and safety errors from XR or fixed-camera lab video. Identifies pipette volume deviations, forgotten reagent additions, uncapped tubes, contamination risks, sample mix-ups, and other observable hazards. Outputs structured JSON with error type, timestamp, severity, and corrective action suggestions for real-time alerts or post-hoc audit.
Search FDA drug labels with natural language queries. Official drug information, indications, and safety data via Valyu.
Search DrugBank comprehensive drug database with natural language queries. Drug mechanisms, interactions, and safety data powered by Valyu.
Converts first-person XR headset video into a structured experiment timeline log. Extracts timestamped events (action, object, location, result) via VLM or action recognition, outputs Markdown or JSON for downstream analysis, reporting, protocol compliance audit, or ELN attachment.
Egocentric Hand-Object Segmentation (EgoHOS) - pixel-level hand and object segmentation in egocentric videos. Outputs fine-grained segmentation masks with hand regions highlighted. Specialized for hand-object interaction scenarios with pixel-accurate masks. Ideal for detailed interaction analysis.
Exports any structured experimental data (JSON, tables, time series) to well-formatted Excel (.xlsx) files. Auto-names sheets (Raw Data, Growth Curves, Cell Counts, etc.), adds unit headers and annotation rows, applies consistent styling, and produces lab-ready spreadsheets for sharing, archival, or downstream analysis in R, pandas, or Excel.
Automated SCI-standard Methods section generator from experiment execution records. Parses LabOS skill call chains, structured JSON logs (extract_experiment_data_from_video, analyze_lab_video_cell_behavior), protocol text, and ELN entries to produce flowing, past-tense, passive-voice Methods prose with full reagent citations, equipment model numbers, and statistical analysis subsections. Outputs LaTeX (\subsection{} / \paragraph{}) or Markdown, ready for direct insertion into a manuscript draft.
Facebook Research Hand Tracking Challenge Toolkit - evaluation and visualization tools for 3D hand tracking. Supports loading HOT3D data, computing metrics (PA-MPJPE, AUC, etc.), visualizing 3D pose projections, and generating tracking evaluation reports. Essential for benchmarking hand tracking algorithms.
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